Call variants from the examples produced by make_examples
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
make_examples_tfrecords:file
The actual sharded input files, from DEEPVARIANT_MAKEEXAMPLES process
*.gz
call_variants_tfrecords
meta:list
Each output contains: unique ID string from input channel, meta, tfrecord file with variant calls.
${prefix}.call-*-of-*.tfrecord.gz:list
versions
versions.yml:file
File containing software version
versions.yml
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data
