Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
bai:file
BAM index file
*.bai
fusions:file
Arriba fusions file
*.tsv
meta2:map
gtf:file
Annotation GTF file
*.gtf
meta3:map
protein_domains:file
Protein domain annotation files
*.gff3
meta4:map
cytobands:file
Coordinates of the Giemsa staining bands needed to draw ideograms
.tsv
pdf
*.pdf:file
File contains fusions visualisation
*.pdf
versions
versions.yml:file
File containing software versions
versions.yml
Fast and accurate gene fusion detection from RNA-Seq data
