nf-core/configs: EVA_GRACE Configuration
All nf-core pipelines have been successfully configured for use on the GRACE cluster at the Max Planck Institute for Evolutionary Anthropology (MPI-EVA).
To use, run the pipeline with -profile eva_grace
. You can further with optimise submissions by specifying which cluster queue you are using e,g, -profile eva_grace
. This will download and launch the eva_grace.config
which has been pre-configured with a setup suitable.
Config file
//Profile config names for nf-core/configs
params {
config_profile_description = 'MPI-EVA GRACE cluster profile provided by nf-core/configs.'
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://eva.mpg.de'
// TODO have IT make a generic one shared storage available
igenomes_base = "/mnt/archgen/public_data/igenomes"
max_memory = 1000.GB
max_cpus = 144
max_time = 30.d
}
// Preform work directory cleanup after a successful run (use --debug to not run)
cleanup = true
singularity {
enabled = true
autoMounts = true
// TODO have IT make a generic one shared storage available
cacheDir = "/mnt/archgen/tools/singularity/containers/"
}
process {
executor = 'slurm'
queue = { task.time < 4.h ? 'short' : 'standard' }
resourceLimits = [
memory: 1000.GB,
cpus: 144,
time: 30.d,
]
}